Background
Hazrina Yusof Hamdani, PhD
ADVANCED MEDICAL & DENTAL INSTITUTE
Doctor of Philosophy (Bioinformatics)
School of Bioscience and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia.
Thesis: Computational Annotation and Analysis of the Hydrogen Bonded Base Interaction Clusters in RNA 3-Dimensional Structures
Master of Science (Computer Science)
School of Computer Sciences, Universiti Sains Malaysia.
Dissertation: Parallel PhyloCon Algorithm using OpenMP for Regulatory Element Prediction
Bachelor of Technology (Hons) Information Technology, Major: Software Engineering, Minor: Digital Electronics
Computer & Information Science Department, Universiti Teknologi PETRONAS.
Final Year Project: Gene Prediction System
EXPERTISE
1. Bioinformatics
2. Information,Computer And Communication Technology
3. Mathematical Sciences
RESEARCH INTERESTS
1. Structural Bioinformatics
2. Biomolecular Interactions
3. Biomolecular Structure and Function
4. RNA Motifs
5. Computational Biochemistry
6. Artificial Intelligence
7. Parallel and Distributed Computing
8. High Performance Computing
9. Data Mining
10. Database and Web Services
11. Genome Annotation, Assembly and Mapping
12. Genome Platform and Tool
STUDENT SUPERVISION
Graduate Supervision :
A. Active Ph.D
i. Main Supervisor
1. Parteeban A/l M Varatharajoo , 2021, Doctor of Philosophy, Research - Part Time, Computational Improvement and Analysis of RNA Structure Modules Based on Subgraph Isomorphisms of Hydrogen-Bonded Base Clusters Deployed Using Parallel Computing Technology in RNA 3-Dimensional Structures., Main Supervisor (AKTIF)
ii. Co-Supervisor
1.Yeoh Tzi Shien, 2020, Doctor of Philosophy, Research - Full Time, Co-supervisor (AKTIF)
B. Active Master Degree
i. Main Supervisor
1. Yee Hoong Kuan , 2020, Master, Research - Full Time, Computational Analysis of Protein-RNA Interaction Structural Motifs in Protein-RNA Complex Of 3-Dimentional Structures., Main Supervisor (AKTIF)
ii. Co-Supervisor
1. Nur Syamilah Bt Rosli , 2021, Master, Research - Full Time, Whole genome sequencing and gene annotation of Stichopus horrens sp (Sea cucumber). , Co-supervisor (AKTIF)
2. Teh Hui Wen, 2020, Master, Research - Full Time, Mutational analysis of multidrug resistance tuberculosis strains isolated in Malaysia., Co-supervisor (AKTIF)
C. Undergraduate Supervision :
A. Active
i. Main Supervisor
1. Nurul Nasuha Binti Maznan, 2020, Final Year Project, COGNAC Android Application, Main Supervisor, (AKTIF)
Research ID's
| SCOPUS AUTHOR ID: 56513850100 |
RESEARCHER ID: B-2645-2018 |
| GOOGLE SCHOLAR: ZvLUc4QAAAAJ |
ORCID: 0000-0003-3973-9921 |
Research Grant
i. Principal Investigator
1. Hazrina Binti Yusof Hamdani, EFFIRUL IKHWAN BIN RAMLAN , MOHD FIRDAUS MOHD RAIH , Rosni Binti Abdullah @ Mustafa, A novel method for classification of RNA structure modules based on subgraph isomorphisms of hydrogen-bonded base clusters deployed using parallel computing technology,KEMENTERIAN PENDIDIKAN MALAYSIA , RM68,200.00, 01/09/2019-31/05/2022, (Active )
ii. Co-Researcher
1. Nurul Hashimah Binti Ahamed Hassain Malim, Amira Suriaty Binti Yaakop , Hazrina Binti Yusof Hamdani, Lau Nyok Sean, MOHD NASRUDIN MOHAMAD , MUHAMMAD FARID ABDUL RAHIM , NURUL SYAFIKA MOHAMAD FAUZI , Rosni Binti Abdullah @ Mustafa, A framework for the identification of the best crosses that produced high-yielding and stress tolerant crop using artificial intelligence techniques,KEMENTERIAN PENGAJIAN TINGGI , RM86,800.00, 10/03/2020-09/03/2023, (Active )
2. Hazrina Binti Yusof Hamdani, A Big Data Analytics Platform For Optimizing Oil Palm Yield Via Breeding By Design,Skim Geran Penyelidikan Jangka Panjang (LRGS) – Malaysia Research University Network (MRUN), RM0.00, 10/03/2020-09/03/2023, (Active )
i. Principal Investigator
1. Hazrina Binti Yusof Hamdani, MOHD FIRDAUS MOHD RAIH , Classification of Base Arrangements to Identify RNA Tertiary Motifs Based on Hydrogen Bonded Interactions in RNA Three-Dimensional Structures,USM (JANGKA PENDEK) , RM31,167.00, 01/02/2019-31/10/2021, (Active )
Publications
14 Publications ( From Year 2021 To Year 2008 )
2021
1) Graph Theoretical Methods and Workflows for Searching and Annotation of RNA Tertiary Base Motifs and Substructures
R Emrizal, HY Hamdani, M Firdaus-Raih International Journal of Molecular Sciences 22 (16), 8553
2020
1) In silico molecular docking in DNA aptamer development
TN Navien, R Thevendran, HY Hamdani, TH Tang, M Citartan Biochimie
2019
1 ) Identification of Structural Motifs Using Networks of Hydrogen-Bonded Base Interactions in RNA Crystallographic Structures
HY Hamdani, M Firdaus-Raih
Crystals 9 (11), 550
2) Predicting RNA-RNA Interactions in Three-Dimensional Structures
HY Hamdani, ZH Yahaya, M Firdaus-Raih
Academic Press
2018
1) Analysis and Filtering for Redundant Data of Hydrogen-bonded Base Interaction Clusters in RNA 3-Dimensional Structures
HY Hamdani, M Firdaus-Raih
SAINS MALAYSIANA 47 (8), 1731-1739
2016
1) InterRNA: a database of base interactions in RNA structures
SD Appasamy, HY Hamdani, EI Ramlan, M Firdaus-Raih
Nucleic acids research 44 (D1), D266-D271
2015
1) A computational approach for the annotation of hydrogen-bonded base interactions in crystallographic structures of the ribozymes
HY Hamdani, PJ Artymiuk, M Firdaus-Raih
AIP Conference Proceedings 1678 (1), 030019
2014
1) COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures
M Firdaus-Raih, HY Hamdani, N Nadzirin, EI Ramlan, P Willett, ...
Nucleic acids research 42 (W1), W382-W388
2012
1) NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules
HY Hamdani, SD Appasamy, P Willett, PJ Artymiuk, M Firdaus-Raih
Nucleic acids research 40 (W1), W35-W41
2010
1) Enhanced CAFÉ indexing algorithm using hashing function
NABA Rashid, R Ghadban, HY Hamdani, A Atheer
2010 International Symposium on Information Technology 3, 1468-1472
2) Multi-level parallelism in Phylocon algorithm
HY Hamdani
2010 International Symposium on Information Technology 2, 710-714
2009
1) Influenced Factors on Computation Among Quick Search, Two-Way and Karp-Rabin Algorithms
AA Abdulrazzaq, NA Rashid, HY Hamdani, HBY Ghadban, RM Mahmood
Proceeding of the 3rd International Conference on Informatics and Technology …
2) Fast phylocon algorithm using OpenMP
HY Hamdani, MFF Wajidi, AA Abdulrazzaq, RM Ghadban
2009 International Conference on Computer Technology and Development 1, 550-553
2008
1) Gene prediction system
HY Hamdani, SRM Shukri
2008 International Symposium on Information Technology 2, 1-7
Teaching Experience
SESSION 20/21
CPT 115 (Mathematical Methods for Computer Science),
School of Computer Sciences
CMT322/CMM323 (Web Engineering and Technologies),
School of Computer Sciences
Topics in TMR 504 (Professional and Research Skills), IPPT.
1. Introduction to Bioinformatics and Medical Bioinformatics (1 hour)
2. Bioinformatics Research Facility at USM and Malaysia (1 hour)
3. Practical: Bioinformatics (3 hours)
SESSION 19/20
CPT 115 (Mathematical Methods for Computer Science),
School of Computer Sciences
Topics in TMR 503 (Proteomics and Medicine), IPPT.
1. Introduction to Proteomics and Medicine (1 hour)
2. Structural Proteomics (2 hours)
3. Frontiers in Proteomics (1 hour)
Topics in TMR 504 (Professional and Research Skills), IPPT.
1. Introduction to Bioinformatics and Medical Bioinformatics (1 hour)
2. Bioinformatics Research Facility at USM and Malaysia (1 hour)
3. Practical: Bioinformatics (3 hours)
4. Research Management Skill (1 hour)
5. Multimedia Skill (1 hour)
6. Communication Skill (4 hours)
SESSION 18/19
Topics in TMR 504 (Professional and Research Skills), IPPT.
1. Introduction to Bioinformatics and Medical Bioinformatics (1 hour)
2. Bioinformatics Research Facility at USM and Malaysia (1 hour)
3. Practical: Bioinformatics (3 hours)
Journal Editorial Board
1. Associate Editor, Asia Pacific Journal of Molecular Biology and Biotechnology (APJMBB), 01/10/2019 - 30/09/2020 (International )
2. Associate Editor, Associate Editor of Asia-Pacific Journal of Molecular Biology and Biotechnology (APJMBB), 01/10/2020 - 30/09/2022 (International )
Member Of Professional / Academic Associations
1. EXCO , Malaysian Society of Bioinformatics & Computational Biology (MaSBiC), 2019-2020 (National )
2. EXCO , Malaysian Society of Bioinformatics & Computational Biology (MaSBiC), 2020-2022 (National )
1. Members , Malaysian Society of Bioinformatics & Computational Biology (MaSBiC), 2019 (National )
2. Members , Malaysian Society of Bioinformatics & Computational Biology (MaSBiC), 2020 (National )
3. Members , Malaysian Society of Bioinformatics & Computational Biology (MaSBiC), 2021 (National )
Collaborators
