Welcome to RNA Informatics & Networks Analytics Lab

Image Get Started

Background

Hazrina Yusof Hamdani, PhD

ADVANCED MEDICAL & DENTAL INSTITUTE

Doctor of Philosophy (Bioinformatics)

School of Bioscience and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia.

Thesis: Computational Annotation and Analysis of the Hydrogen Bonded Base Interaction Clusters in RNA 3-Dimensional Structures

Master of Science (Computer Science)

School of Computer Sciences, Universiti Sains Malaysia.

Dissertation: Parallel PhyloCon Algorithm using OpenMP for Regulatory Element Prediction

Bachelor of Technology (Hons) Information Technology, Major: Software Engineering, Minor: Digital Electronics

Computer & Information Science Department, Universiti Teknologi PETRONAS.

Final Year Project: Gene Prediction System

img

EXPERTISE

1. Bioinformatics

2. Information,Computer And Communication Technology

3. Mathematical Sciences

img

RESEARCH INTERESTS

1. Structural Bioinformatics

2. Biomolecular Interactions

3. Biomolecular Structure and Function

4. RNA Motifs

5. Computational Biochemistry

6. Artificial Intelligence

7. Parallel and Distributed Computing

8. High Performance Computing

9. Data Mining

10. Database and Web Services

11. Genome Annotation, Assembly and Mapping

12. Genome Platform and Tool

img

STUDENT SUPERVISION

Graduate Supervision :

A. Active Ph.D
i. Main Supervisor
1. Parteeban A/l M Varatharajoo , 2021, Doctor of Philosophy, Research - Part Time, Computational Improvement and Analysis of RNA Structure Modules Based on Subgraph Isomorphisms of Hydrogen-Bonded Base Clusters Deployed Using Parallel Computing Technology in RNA 3-Dimensional Structures., Main Supervisor (AKTIF)

ii. Co-Supervisor
1.Yeoh Tzi Shien, 2020, Doctor of Philosophy, Research - Full Time, Co-supervisor (AKTIF)

B. Active Master Degree
i. Main Supervisor
1. Yee Hoong Kuan , 2020, Master, Research - Full Time, Computational Analysis of Protein-RNA Interaction Structural Motifs in Protein-RNA Complex Of 3-Dimentional Structures., Main Supervisor (AKTIF)

ii. Co-Supervisor
1. Nur Syamilah Bt Rosli , 2021, Master, Research - Full Time, Whole genome sequencing and gene annotation of Stichopus horrens sp (Sea cucumber). , Co-supervisor (AKTIF)
2. Teh Hui Wen, 2020, Master, Research - Full Time, Mutational analysis of multidrug resistance tuberculosis strains isolated in Malaysia., Co-supervisor (AKTIF)

C. Undergraduate Supervision :

A. Active
i. Main Supervisor
1. Nurul Nasuha Binti Maznan, 2020, Final Year Project, COGNAC Android Application, Main Supervisor, (AKTIF)

Research ID's

SCOPUS AUTHOR ID:
56513850100
RESEARCHER ID:
B-2645-2018
GOOGLE SCHOLAR:
ZvLUc4QAAAAJ
ORCID:
0000-0003-3973-9921

Research Grant

NATIONAL

i. Principal Investigator
1. Hazrina Binti Yusof Hamdani, EFFIRUL IKHWAN BIN RAMLAN , MOHD FIRDAUS MOHD RAIH , Rosni Binti Abdullah @ Mustafa, A novel method for classification of RNA structure modules based on subgraph isomorphisms of hydrogen-bonded base clusters deployed using parallel computing technology,KEMENTERIAN PENDIDIKAN MALAYSIA , RM68,200.00, 01/09/2019-31/05/2022, (Active )

ii. Co-Researcher
1. Nurul Hashimah Binti Ahamed Hassain Malim, Amira Suriaty Binti Yaakop , Hazrina Binti Yusof Hamdani, Lau Nyok Sean, MOHD NASRUDIN MOHAMAD , MUHAMMAD FARID ABDUL RAHIM , NURUL SYAFIKA MOHAMAD FAUZI , Rosni Binti Abdullah @ Mustafa, A framework for the identification of the best crosses that produced high-yielding and stress tolerant crop using artificial intelligence techniques,KEMENTERIAN PENGAJIAN TINGGI , RM86,800.00, 10/03/2020-09/03/2023, (Active )
2. Hazrina Binti Yusof Hamdani, A Big Data Analytics Platform For Optimizing Oil Palm Yield Via Breeding By Design,Skim Geran Penyelidikan Jangka Panjang (LRGS) – Malaysia Research University Network (MRUN), RM0.00, 10/03/2020-09/03/2023, (Active )

UNIVERSITY

i. Principal Investigator
1. Hazrina Binti Yusof Hamdani, MOHD FIRDAUS MOHD RAIH , Classification of Base Arrangements to Identify RNA Tertiary Motifs Based on Hydrogen Bonded Interactions in RNA Three-Dimensional Structures,USM (JANGKA PENDEK) , RM31,167.00, 01/02/2019-31/10/2021, (Active )

Publications

About

14 Publications ( From Year 2021 To Year 2008 )

img

2021

1) Graph Theoretical Methods and Workflows for Searching and Annotation of RNA Tertiary Base Motifs and Substructures

R Emrizal, HY Hamdani, M Firdaus-Raih International Journal of Molecular Sciences 22 (16), 8553

img

2020

1) In silico molecular docking in DNA aptamer development

TN Navien, R Thevendran, HY Hamdani, TH Tang, M Citartan Biochimie

img

2019

1 ) Identification of Structural Motifs Using Networks of Hydrogen-Bonded Base Interactions in RNA Crystallographic Structures

HY Hamdani, M Firdaus-Raih

Crystals 9 (11), 550


2) Predicting RNA-RNA Interactions in Three-Dimensional Structures

HY Hamdani, ZH Yahaya, M Firdaus-Raih

Academic Press


img

2018

1) Analysis and Filtering for Redundant Data of Hydrogen-bonded Base Interaction Clusters in RNA 3-Dimensional Structures

HY Hamdani, M Firdaus-Raih

SAINS MALAYSIANA 47 (8), 1731-1739

img

2016

1) InterRNA: a database of base interactions in RNA structures

SD Appasamy, HY Hamdani, EI Ramlan, M Firdaus-Raih

Nucleic acids research 44 (D1), D266-D271

img

2015

1) A computational approach for the annotation of hydrogen-bonded base interactions in crystallographic structures of the ribozymes

HY Hamdani, PJ Artymiuk, M Firdaus-Raih

AIP Conference Proceedings 1678 (1), 030019

img

2014

1) COGNAC: a web server for searching and annotating hydrogen-bonded base interactions in RNA three-dimensional structures

M Firdaus-Raih, HY Hamdani, N Nadzirin, EI Ramlan, P Willett, ...

Nucleic acids research 42 (W1), W382-W388

img

2012

1) NASSAM: a server to search for and annotate tertiary interactions and motifs in three-dimensional structures of complex RNA molecules

HY Hamdani, SD Appasamy, P Willett, PJ Artymiuk, M Firdaus-Raih

Nucleic acids research 40 (W1), W35-W41

img

2010

1) Enhanced CAFÉ indexing algorithm using hashing function

NABA Rashid, R Ghadban, HY Hamdani, A Atheer

2010 International Symposium on Information Technology 3, 1468-1472


2) Multi-level parallelism in Phylocon algorithm

HY Hamdani

2010 International Symposium on Information Technology 2, 710-714


img

2009

1) Influenced Factors on Computation Among Quick Search, Two-Way and Karp-Rabin Algorithms

AA Abdulrazzaq, NA Rashid, HY Hamdani, HBY Ghadban, RM Mahmood

Proceeding of the 3rd International Conference on Informatics and Technology …


2) Fast phylocon algorithm using OpenMP

HY Hamdani, MFF Wajidi, AA Abdulrazzaq, RM Ghadban

2009 International Conference on Computer Technology and Development 1, 550-553


img

2008

1) Gene prediction system

HY Hamdani, SRM Shukri

2008 International Symposium on Information Technology 2, 1-7

Teaching Experience

img

SESSION 20/21 

CPT 115 (Mathematical Methods for Computer Science),
School of Computer Sciences

CMT322/CMM323 (Web Engineering and Technologies),
School of Computer Sciences

Topics in TMR 504 (Professional and Research Skills), IPPT.

1. Introduction to Bioinformatics and Medical Bioinformatics (1 hour)
2. Bioinformatics Research Facility at USM and Malaysia (1 hour)
3. Practical: Bioinformatics (3 hours)

img

SESSION 19/20

CPT 115 (Mathematical Methods for Computer Science),
School of Computer Sciences

Topics in TMR 503 (Proteomics and Medicine), IPPT.

1. Introduction to Proteomics and Medicine (1 hour)
2. Structural Proteomics (2 hours)
3. Frontiers in Proteomics (1 hour)

Topics in TMR 504 (Professional and Research Skills), IPPT.

1. Introduction to Bioinformatics and Medical Bioinformatics (1 hour) 
2. Bioinformatics Research Facility at USM and Malaysia (1 hour) 
3. Practical: Bioinformatics (3 hours)
4. Research Management Skill (1 hour)
5. Multimedia Skill (1 hour)
6. Communication Skill (4 hours) 

img

SESSION 18/19

Topics in TMR 504 (Professional and Research Skills), IPPT.

1. Introduction to Bioinformatics and Medical Bioinformatics (1 hour)
2. Bioinformatics Research Facility at USM and Malaysia (1 hour)
3. Practical: Bioinformatics (3 hours)

Journal Editorial Board

EDITOR

1. Associate Editor, Asia Pacific Journal of Molecular Biology and Biotechnology (APJMBB), 01/10/2019 - 30/09/2020 (International )

2. Associate Editor, Associate Editor of Asia-Pacific Journal of Molecular Biology and Biotechnology (APJMBB), 01/10/2020 - 30/09/2022 (International )

Member Of Professional / Academic Associations

EXCO MEMBER (PER APPOINTMENT)

NATIONAL

1. EXCO , Malaysian Society of Bioinformatics & Computational Biology (MaSBiC), 2019-2020 (National )

2. EXCO , Malaysian Society of Bioinformatics & Computational Biology (MaSBiC), 2020-2022 (National )

MEMBER (PER SOCIETY)

NATIONAL

1. Members , Malaysian Society of Bioinformatics & Computational Biology (MaSBiC), 2019 (National )

2. Members , Malaysian Society of Bioinformatics & Computational Biology (MaSBiC), 2020 (National )

3. Members , Malaysian Society of Bioinformatics & Computational Biology (MaSBiC), 2021 (National )

Collaborators

img

Contact Us

SAINS@BERTAM,Universiti Sains Malaysia,13200 Kepala Batas, Pulau Pinang

(+6) 04-562 2363

Loading
Your message has been sent. Thank you!